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AnnotationFilterConvert.m
BaselineWanderRemovalMedi...
BaselineWanderRemovalSpli...
combine_anns.m
DisplayResults.m
print2eps.m
plot2svg.m
plot2svg_beta.m
tutorial_plot2svg.m
tutorial_plot2svg_beta.m
extract_interval.m
PPG_pulses_detector.m
findoutl.m
generalized_qdc.m
getident_multids.m
getnlab_multids.m
logistic.mSigmoid function
QRScorrector.m
qs_filter_design.m
read_HES_ann.m
read_HES_format.m
read_HES_header.m
read_ishne.m
read_ishne_format.m
read_ishne_header.m
multiqrsend.m
multiqrson.m
qrswavef.m
qspfilt5.m
searchoff.m
searchon.m
zerocros.m
writeheader.m
ADC2realunits(x, zero, gain)Convert adimentional sample values to real units
ADC2units(x, header, targ...Convert adimentional sample values to target voltage units
AUC_calc(aux_roc)Compute area under the ROC curve (AUC).
Annotation_process(ann, r...Convert heartbeat type of annotation from valid ECG formats to EC57 AAMI
CG_CLASSIFY(VV,Dim,XX,tar...Version 1.000
CG_CLASSIFY_INIT(VV,Dim,w...Version 1.000
CalcRRserieQuality(signal...(Obsolete) Estimate the quality of QRS complex detections
CalcRRserieRatio(time_ser...Estimate the quality of QRS complex detections
CalculatePerformanceECGta...(Internal) Calculate the performance data of a QRS detection task.
CollectResutls( tmp_path,...Java user interface is started. Not started in clusters for example.
ConcatenateQRSdetectionPa...(Internal) Concatenate two payloads.
DelayedCovMat(x, peaks, w...(Internal) Delayed covariance matrix calculation
DisplayConfusionMatrix( C...(Internal) Pretty display in Screen the confusion matrix.
DoHouseKeeping(added_path...
ECGformat(recording_filen...Gets the format of an ECG recording filename
ExpertUserInterface(cCent...open a new figure
GTHTMLtable(NAME, MAT, FO...GTHTMLtable - Generate an HTML page with a table of a matrix.
GetBestQRSdetections(payl...Fetch the best QRS detections from an ECGtask_QRSdetections object
GetFunctionInvocation( fu...(Internal) Create a string with the invocation of a function
HasAdminPrivs(bAskUserFor...Checks administrator privileges
InstallECGkit(bIgnoreUpdate)Installation script of ecg-kit
L1median(x,tol)L1MEDIAN is an orthogonally equivariant location estimator,
MedianFilt(Input, WinSize...(Internal) Mean/Median filtering
PeakDetection2(data,fs,va...
PiCA(x, peaks, peaks2, wi...
PlotGlobalWaveMarks( user...(Internal) Internal function of plot_ecg_strip
PlotWaveMarks( user_data,...(Internal) Internal function of plot_ecg_strip
PrctileFilt(Input, WinSiz...(Internal) Arbitrary percentile filtering
ResultsForAllDatabases( t...Java user interface is started. Not started in clusters for example.
SLR(marks,fa,QRSLIMIT,k,d...post processing rule for delineation
SLR2(marks,messages)post processing rule for delineation
Seconds2HMS(data, prec)(Internal) Create a string of hours mins and seconds based on data in seconds
TaskPartition( task_size,...(Internal) Generate a PIDs work list
UnInstallECGkit( bIgnoreA...Uninstallation script of ecg-kit
WFDB_command_prefix(recor...System commands to initialize the WFDB toolbox
a2hbc_examples()
a2hbc_main(varargin)A2HBC main script
adaboostc(varargin)ADABOOSTC
addpath_if_not_added(str_...(Internal) Add the path only if not was already added.
adjust_string(str2trimm, ...(Internal) Works with strings to center, trim and justify to a certain string width
adjustedboxplot(x,varargin)%ADJUSTEDBOXPLOT produces an adjusted box and whisker plot with one box for each column
adjustedoutlyingness(x,va...ADJUSTEDOUTLYINGNESS calculates the 'Skewness-Adjusted Outlyingness'.
adm(x)ADM is a scale estimator given by the Average Distance to the Median.
affine(R,offset,lablist_i...AFFINE Construct affine (linear) mapping from parameters
agnes(x,method,vtype,stdi...AGNES is a agglomerative clustering algorithm. It returns a hierarchy of clusters.
alineate_positions( val1,...(Internal) Alineate wave positions (onset, peak and offsets commonly)
append_pdfs(varargin)APPEND_PDFS Appends/concatenates multiple PDF files
arrfit(X,y,lambda,precision)
arrow( arrow_start, arrow...(Internal) Creates arrows in grapics
autovec_calculation(wtECG...(Internal) Calculate eigenvalues and vectors
autovec_calculation_robus...(Internal) Calculate eigenvalues and vectors using robust covariance estimation
averagecAVERAGEC Combining of linear classifiers by averaging coefficients
bagc(varargin)BAGC Bag classifier for classifying sets of object instances
bagcc(dobj,combc)BAGCC Combining classifier for classifying bags of objects
baggingcBAGGINGC Bootstrapping and aggregation of classifiers
bagplot(x,varargin)BAGPLOT draws a bagplot, which is a generalisation of the univariate boxplot
band2obj(varargin)BAND2OBJ Mapping image bands to objects
bandpass_filter_design(Fs)
bandsel(varargin)BANDSEL Selection of bands from object images
bayesc(varargin)BAYESC Bayes classifier based on given density estimates
bhatm(a,n)BHATM Bhattacharryya linear feature extraction mapping
bord(A,n,m)
bord(A,n,m)
bpxnc(varargin)BPXNC Back-propagation trained feed-forward neural net classifier
buscamin(x)It searches the first minimum of the modulus of x.
bxb( ann, test_qrs_idx, h...(Internal) Compares two heartbeat series and produce the confusion matrix as result
calc_btime( start_sample,...(Internal) Creates a string with the base time
calc_co_ocurrences(hb_idx...(Internal) Calculate the heartbeats co-ocurrences
calc_correlation_gain(sig...(Internal) Calculate an estimate of the SNR of ECG signal, considering signal the ensemble average, and noise each realization minus the ensemble average.
calculateSeriesQuality(pa...Estimate the quality of QRS complex detections
cat2data(data,labels)CAT2DATA Create categorical dataset
cda(x,group,varargin)CDA performs linear and quadratic classical discriminant analysis
cdats(a,red)CDATS Support routine for checking datasets
cdq(x,y,c,varargin)CDQ computes Censored Depth Quantiles for regression, as described in
checktoolbox(name)CHECKTOOLBOX Check avialability of toolbox
chernoffm(a,n,r)CHERNOFFM Suboptimal discrimination linear mapping (Chernoff mapping)
chiqqplot(y,p,class)CHIQQPLOT produces a Quantile-Quantile-plot of the vector y
circles3d(N)CIRCLES3D
Create a data set containing 2 circles in 3 dimensions.
clara(x,kclus,vtype,stdiz...CLARA is the 'Clustering Large Applications' clustering algorithm.
classSVD(x)CLASSSVD performs the singular value decomposition of a matrix with more
classc(w,flag)CLASSC Convert classifier to normalized classifier (yielding confidences)
classd(a,w)CLASSD Return labels of classified dataset, outdated, use LABELD instead
classification_errors(arg1)CONFMAT Construct confusion matrix
classim(a,w)CLASSIM Classify image and return resulting label image
classnames(a,N)CLASSNAMES Get names of classes of dataset or classifier
cleval(a,classf,learnsize...CLEVAL Classifier evaluation (learning curve)
clevalb(a,classf,learnsiz...CLEVALB Classifier evaluation (learning curve), bootstrap version
clevalf(a,classf,featsize...CLEVALF Classifier evaluation (feature size curve)
clevals(a,classf,featsize...CLEVALS Classifier evaluation (feature size/learning curve), bootstrap possible
closemess(fid,n)CLOSEMESS Close progress message
clusplot(x,ncluv)CLUSPLOT creates a bivariate plot visualizing a partition (clustering)
cluster_data_em(data2clus...
cluster_data_with_EM_clus...(Internal) Cluster data with expectation-maximization algorithm
cmapm(arg1,arg2,par1,par2...CMAPM Compute some special fixed mappings
cnormcCNORMC Classifier normalisation for ML posterior probabilities
col2gray(varargin)COL2GRAY Fixed mapping converting multi-band images to single band images
colvec(x)(Internal) Reshape the input into a column vector
compute_kernel(a,s,kernel)
concatm(argin)CONCATM Fixed-cell mapping concatenating cell array of datasets or mappings
confmatCONFMAT Construct confusion matrix
confmat_newCONFMAT Construct confusion matrix
copyfig(fh)COPYFIG Create a copy of a figure, without changing the figure
costm(varargin)COSTM
Combiner mapping handling costs in classifications
countTransitions(data, ns...Count the discrete transitions that occur in data
covm(a,n)COVM Compute covariance matrix for large datasets
covm(a,n)COVM Compute covariance matrix for large datasets
cpca(x,varargin)CPCA performs a classical principal components analysis
cpcr(x,y,varargin)CPCR performs a classical principal components regression.
createdatafile(a,dirr,roo...CREATEDATAFILE Create datafile on disk
crop_borders(A, bcol, pad...CROP_BORDERS Crop the borders of an image or stack of images
crossval(data,classf,n,nr...CROSSVAL Error/performance estimation by cross validation (rotation)
csimca(x,group,varargin)CSIMCA performs the SIMCA method. This is a classification
csimpls(x,y,varargin)CSIMPLS performs Partial Least Squares regression using the SIMPLS
cvMcd(data,kmax,resMCD,h)CVMCD calculates the robust cross-validated PRESS (predicted residual error sum of squares)
cvRobpca(data,kmax,resrob...CVROBPCA calculates the robust cross-validated PRESS (predicted residual error sum of squares) curve
cvRpcr(x,y,kmax,rmsecv,h,k)CVRPCR calculates the robust RMSECV (root mean squared error of cross-validation) curve
cvRsimpls(x,y,kmax,rmsecv...CVRIMPLS calculates the robust RMSECV (root mean squared error of cross-validation) curve
daisy(x,vtype,metric)DAISY returns a matrix containing all the pairwise dissimilarities
daplot(x,group,center,cov...DAPLOT plots 97.5% tolerances ellipses of the bivariate data set x, which
data2im(a,J)DATA2IM Convert PRTools dataset or datafile to image
dataimDATAIM Image operation on dataset images (deprecated)
datasetconv(a)DATASETCONV Convert to dataset if needed
datasetm(a)DATASETM Fixed mapping for conversion to dataset
datfilt(a,f)DATFILT Filtering of dataset images (deprecated)
datgauss(varargin)DATGAUSS Apply Gaussian filter on images in a dataset
datunifDATUNIF Apply uniform filter on images in a dataset (deprecated)
dbnFit(X, numhid, y, vara...
dbnPredict(testdata, w)Use DBN to predict discrete label for testdata
dbnc(dsTrain, varargin)
dcsc(varargin)DCSC Dynamic Classifier Selection Combiner
ddplot(x,y,cutoff,attrib,...DDPLOT is the distance-distance plot as introduced by Rousseeuw and Van
deNaN_dataset(dsIn, type,...(Internal) Replace NaN from PRdatasets
default_concatenate_funct...Description:
default_finish_function(p...% Description:
define_mapping(varargin)DEFINE_MAPPING Define untrained or fixed mapping
delineate3D(w1,w2,w3,intr...
delineateP3D(heasig,w1,w2...% [position0,position,A,V,A2,V2]=% delineateP3D(heasig,w1,w2,w3,intreg,scale,timenew,position0,position,intervalo,samp,figuresoff,sig)
demo_svg_waterCreate a new figure and remember the figure handle
design_downsample_filter(...(Internal) Design a filter to downsample signals prior printing to a report
diana(x,vtype,stdize,metr...DIANA is a divisive clustering algorithm. It returns a hierarchy of clusters
dipbin(varargin)DIPBIN Fixed mapping running any binary DIPimage command on one image
dipim(varargin)DIPIM Fixed mapping running any DIPimage command with one input image
dipimagecheckDIPIMAGECHECK
Check whether the DIP_IMAGE toolbox is in the path
diplibwarnDIPLIBWARN
Warn no DIPimage once
disnorm(varargin)DISNORM Trainable mapping for dissimilarity matrix normalization
disp_option_enumeration(s...(Internal) Display an enumeration of options to a string
disp_string_framed(style,...(Internal) Display a message framed to a string
disp_string_title(style, ...(Internal) Display a message framed to a string
disp_xml_nodes(thisNode)(Internal) Display as formated strings an XML node array
disperrorDISPERROR Display error matrix with information on classifiers and datasets
distm(A,B)DISTM Fixed mapping for computing a square Euclidean distance matrix
distm_new(A,B,Directional...DISTM Compute square Euclidean distance matrix
distmahaDISTMAHA Mahalanobis distance
distmaha_newDISTMAHA Mahalanobis distance
distplot(y,cutoff,class,nid)DISTPLOT plots the vector y versus the index.
doublem(a)DOUBLEM Datafile mapping for conversion to double
dps(A,levels,classwise)DPS Correntropy based, hierarchical density preserving data split
drbmc(varargin)DRBMC Trainable classifier by Discriminative Restricted Boltzmann Machine
ds2nfu(varargin)DS2NFU
Convert data space units into normalized figure units.
dtc(a, crit, chisqstopval...DTC Verzakov Tree - Trainable Decision Tree Classifier
dyadicm(a,p,q,fsize)DYADICM Dyadic dataset mapping
ediconEDICON Multi-edit and condense a training set
ellipsplot(center,covar,d...ELLIPSPLOT plots the 97.5% tolerance ellipse of the bivariate data set
emclustEMCLUST Expectation-Maximization clustering
emclustEMCLUST Expectation-Maximization clustering
emclust_new(a,w_clust,n,t...EMCLUST Expectation-Maximization clustering
eps2pdf(source, dest, cro...EPS2PDF
Convert an eps file to pdf format using ghostscript
example_worst_ever_ECG_de...(Internal) Example of user-created QRS detector
example_worst_ever_QRS_de...(Internal) Example of user-created QRS detector
examples(pid_str, example...Example of how to use the ecg-kit
exist_distributed_file(fi...(Internal) Check the existence of a file in a distributed (slow) filesystem
expandd(x,m)EXPANDD Expand integer vector to a matrix occurrence table
expandd(x,m)EXPANDD Expand integer vector to a matrix occurrence table
export_fig(varargin)EXPORT_FIG
Exports figures in a publication-quality format
extractmcdregres(resMcd,T...EXTRACTMCDREGRES is an auxiliary function for cross-validation with RPCR and RSIMPLS.
fanny(x,kclus,vtype,metri...FANNY is a fuzzy clustering algorithm. It returns a list representing a fuzzy clustering of the data
fdsc(varargin)FDSC Trainable Feature based Dissimilarity Space Classifier
feat2lab(a,n)FEAT2LAB
Label dataset by one of its features and remove this feature
feat2obj(a)FEAT2OBJ Transform feature images to object images in dataset
feateval(varargin)FEATEVAL Evaluation of feature set for classification
feateval_new(a,crit,t, va...FEATEVAL Evaluation of feature set for classification
featrank(varargin)FEATRANK Feature ranking on individual performance for classification
featsel(varargin)FEATSEL Fixed mapping for selecting given features
featselb(varargin)FEATSELB Trainable mapping for backward feature selection
featself(varargin)FEATSELF Trainable mapping for forward feature selection
featseli(varargin)FEATSELI Trainable mapping for individual feature selection
featsellr(a,crit,ksel,l,r...FEATSELLR Plus-L-takeaway-R feature selection for classification
featselm(a,crit,arg3,ksel...FEATSELM Feature selection map
featselo(varargin)FEATSELO Branch and bound feature selection
featselp(varargin)FEATSELP Trainable mapping for Pudil's floating feature selection
featselv(a)FEATSELV Varying feature selection
featsetc(a,objclassf,fset...FEATSETC Set classifier
featsetcc(dobj,combc)FEATSETCC Feature set combining classifier
ffnc(alg,a,units,max_iter...FFNC Feed-forward neural net classifier back-end
fiducialf(position,firstn...[position,timeqrs,lastqrs,intervalo,numlatdet,time,messages]= fiducialf(position,firstnewsamp,samp,heasig,w,eps,nlead,lastqrs,timeqrs,numlatdet,messages)
file2dset(name,varargin)FILE2DSET Load and convert dataset from disk file
filtim(varargin)FILTIM Fixed mapping to filter images in datasets and datafiles
filtm(varargin)FILTM Mapping to filter objects in datasets and datafiles
findclasses(varargin)FINDCLASSES Fixed mapping for finding object indices of all classes
first_simple_example()Very simple example of how to use the ecg-kit
fisherc(a)FISHERC Trainable classifier: Fisher's Least Square Linear Discriminant
fisherm(a,n,alf)FISHERM Optimal discrimination linear mapping (Fisher mapping, LDA)
fix_lines(fstrm, fname2)FIX_LINES
Improves the line style of eps files generated by print
fixedcc(a,w,type,name,par)FIXEDCC Construction of fixed combiners, back-end routine
font_size(size)FONT_SIZE Set large graphic font
gauss(n,u,g,labtype)GAUSS Generation of a multivariate Gaussian dataset
gaussm(a,n,r,s,dim)GAUSSM Mixture of Gaussians density estimate
gaussm(varargin)GAUSSM Trainable mapping, mixture of Gaussians (MoG) density estimate
gencirc(n,s)GENCIRC Generation of a one-class circular dataset
genclass(N,p)GENCLASS Generate class frequency distribution
gendat(varargin)GENDAT Random sampling of datasets for training and testing
gendatb(N,s)GENDATB Generation of banana shaped classes
gendatc(N,k,ma,labtype)GENDATC Generation of two spherical classes with different variances
gendatd(N,k,d1,d2,labtype)GENDATD Generation of 'difficult' normally distributed classes
gendatgauss(n,u,g,labtype)GENDATGAUSS (Formerly GAUSS) Generation of a multivariate Gaussian dataset
gendath(N,labtype)GENDATH Generation of Highleyman classes
gendati(im,ws,m,label)GENDATI Create dataset from randomly selected windows in a given image
gendatk(varargin)GENDATK K-Nearest neighbor data generation
gendatl(N,s)GENDATL Generation of Lithuanian classes
gendatlin(n,b0,b1,sig)GENDATLIN Generation of linear regression data
gendatm(n)GENDATM Generation of multi-class 2-D data
gendatp(varargin)GENDATP Parzen density data generation
gendatr(x,y)GENDATR Generation of regression data
gendatsGENDATS Generation of a simple classification problem of 2 Gaussian classes
gendatsGENTRUNK Generation of Trunk's classification problem of 2 Gaussian classes
gendatsin(nrx,noise)GENREGSIN Generate sinusoidal regression data
gendatsinc(n,sig)GENDATSINC Generate Sinc data
gendatv(varargin)GENDATV Generation of a very large dataset
gendatw(a,v,n)GENDATW Sample dataset by given weigths
genlab(n,lablist)GENLAB Generate labels for classes
gensubsets(input,S)GENSUBSETS Generate sequence of nested training sets
getAnnNames(aux_struct)(Internal) Get names of annotations from annotation structure
get_ECG_idx_from_header(E...(Internal) Guess ECG signals indexes in a multimodal recording
get_PPG_ABP_idx_from_head...(Internal) Guess PPG/ABP signals indexes in a multimodal recording
get_QRS_from_payload(QRS_...(Internal) Get QRS detections from a payload generated by ECGtask_QRS_detection
get_time_from_xml_tag(ele...(Internal) Converts time from tag to seconds in an XML node "element"
getfeat(par)GETFEAT Get feature labels of a dataset or a mapping
getlab(a)GETLAB Get labels of dataset or mapping
getname(c,n)GETNAME High level routine for finding names of datasets and classifiers
getopt_parsGETOPT_PARS Get optimal parameters from REGOPTC
getwindows(a,index,wsize,...GETWINDOWS Get pixel feature vectors around given pixels in image dataset
ghostscript(cmd)GHOSTSCRIPT
Calls a local GhostScript executable with the input command
gpr(varargin)GPR Trainable mapping for Gaussian Process regression
greatsort(x)GREATSORT sorts the vector x in descending order.
gridsize(n)GRIDSIZE Set gridsize used in the plot commands
groupnlineup_waves(slpos)(Internal) Alineate wave positions (onset, peak and offsets commonly)
Trainable mapping fitting a Generative Topographic Mapping by EM
halfspacedepth(u,v,x,y)HALFSPACEDEPTH computes the halfspace depth of a (two-dimensional) point theta
hclust(D,type,k)HCLUST hierarchical clustering
histm(varargin)HISTM Histogramming: mapping of dataset (datafile) to histogram
hl(x)HL computes the Hodges-Lehmann location estimate on the columns of x.
hmmViterbiCM(logpi, logA,...Find the most-probable (Viterbi) path through the HMM state trellis.
hmm_prtools(varargin)HMM Hidden Markov Model adapted for PRtools
im2featIM2FEAT Convert Matlab images or datafile to dataset feature
im2gif(A, varargin)IM2GIF Convert a multiframe image to an animated GIF file
im2objIM2OBJ Convert Matlab images or datafile to dataset object
im_bdilation(varargin)IM_BDILATION Fixed mapping for binary dilation (DIP_Image)
im_berosion(varargin)IM_BEROSION Fixed mapping for binary erosion (DIP_Image)
im_box(varargin)IM_BOX Fixed mapping determining a rectangular enclosing a blob (0/1 image)
im_bpropagation(a1,a2,n,c...IM_BPROPAGATION Fixed mapping or binary propagation (DIP_Image)
im_center(varargin)IM_CENTER Fixed mapping shifting blobs to center of gravity
im_dbr(dbase,featsets,cla...IM_DBR Image Database Retrieval GUI
im_features(a,gray,features)IM_FEATURES Fixed mapping computing image features by the Matlab image toolbox
im_fft(varargin)IM_FFT Fixed mapping for 2D FFT
im_fill_norm(a,n,background)IM_FILL_NORM Fixed mapping for normalizing image for display puproses
im_gauss(a,sx,sy,shape)IM_UNIF Uniform filter of images stored in a dataset/datafile
im_gauss(varargin)IM_GAUSS Gaussian filter of images stored in a dataset/datafile (Matlab)
im_gaussf(varargin)IM_GAUSSF Fixed mapping for Gaussian filtering images (DIPImage)
im_gray(varargin)IM_GRAY Fixed mapping converting multi-band images to gray images
im_harris(varargin)IM_HARRIS Fixed mapping executing the Harris corner detector
im_hist(varargin)IM_HIST Histogramming of image dataset (datafile)
im_hist_equalize(a)IM_HIST_EQUALIZE Fixed mapping for histogram equalization (DIP_Image)
im_invert(a)IM_INVERT Fixed mapping for images inversion
im_label(varargin)IM_LABEL Fixed mapping labeling binary images (DIP_Image)
im_maxf(varargin)IM_MAXF Fixed mapping for maximum filter (DIP_Image)
im_mean(a)IM_MEAN Fixed mapping computating the centers of gravity of images
im_measure(a,gray,features)IM_MEASURE Fixed mapping computating features by DIP_Image
im_minf(varargin)IM_MINF Fixed mapping for minimum filter (DIP_Image) (DIP_Image)
im_moments(varargin)IM_MOMENTS Fixed mapping for computing central moments of object images
im_norm(a)IM_NORM Fixed mapping for normalizing images on mean and variance
im_patch(varargin)IM_PATCH Fixed mapping or generating patches from images
im_profile(varargin)IM_PROFILE Fixed mapping computating horizontal and vertical image profiles
im_resize(varargin)IM_RESIZE Fixed mapping for resizing object images
im_rotate(varargin)IM_ROTATE Fixed mapping for image rotation
im_scale(varargin)IM_SCALE Fixed mapping scaling binary images to a giving fraction of pixels 'on'
im_select_blob(a)IM_SELECT_BLOB Fixed mapping selecting largest blob in binary images (DIP_Image)
im_skel(a)IM_SKEL Fixed mapping computing skeletons of binary images (DIP_Image)
im_skel_meas(varargin)IM_SKEL_MEASURE Fixed mapping measuring skeleton-based features
im_stat(varargin)IM_STAT Fixed mapping computating some image statistics
im_stretch(varargin)IM_STRETCH Fixed mapping for contrast stretching of images (DIP_Image)
im_threshold(varargin)IM_THRESHOLD Fixed mapping thresholding images (DIP_Image)
image_dbr(varargin)IMAGE_DBR M-file for image_dbr.fig
immoments(a,type,mom)IMMOMENTS PRTools routine for computing central moments of object images
init_WFDB_library(tmp_pat...(Internal) Init environment variables for using WFDB toolbox
init_ghostscript()(Internal) Init environment variables for using ghostscript
invsigm(arg)INVSIGM Inverse sigmoid map
isAHAformat(filename)(Internal) Check if a recording is in ISHNE format.
isHESformat(filename)(Internal) Check if a recording is in HES format.
isHL7aformat(filename)(Internal) Check if a recording is in HL7a format.
isISHNEformat(filename)(Internal) Check if a recording is in ISHNE format.
isMatlab()(Internal) Check if the kit is running on Matlab
isOctave()(Internal) Check if the kit is running on Octave
is_scalar(p)
is_scalar(p)
is_scalar(p)
iscomdset(a,b,clas)ISCOMDSET Test whether datasets are compatible
isdatafile(a)ISDATAFILE Test whether the argument is a datafile
isdataimISDATAIM Returns true if a dataset contains image objects or image features
isdataset(a)ISDATASET Test whether the argument is a dataset
isdipimageISDIPIMAGE Test whether dipimage is available
isdipimageISDIPIMAGE Test whether dipimage is available
isfeatim(a)ISFEATIM
isgenerator(w)ISGENERATOR Test on generator mapping
isint(m)ISDOUBLE Test on doubles
isint(m)ISDOUBLE Test on doubles
islater( ver_a, ver_b )(Internal) Check if the version a is later than version b
ismapping(w)ISMAPPING Test whether the argument is a mapping
isobjim(a)ISOBJIM test if the dataset contains objects that are images
isolate_axes(ah, vis)ISOLATE_AXES Isolate the specified axes in a figure on their own
isparallel(w)ISPARALLEL Test on parallel mapping
isqrs(ann)isqrs.m is a function for removing non-WAVEFORM LIMITS marks from annotator
isqrs(ann,heasig,t)isqrs.m is a function for getting only QRS marks from annotator
issequential(w)ISSEQUENTIAL Test on sequential mapping
isstacked(w)ISSTACKED Test on stacked mapping
issym(A,delta)ISSYM Checks whether a matrix is symmetric
istrained(w)ISTRAINED Test on trained mapping
isuntrained(w)ISUNTRAINED Test on untrained mapping
isvaldfile(a,m,c)ISVALDFILE Test whether the argument is a valid datafile or dataset
isvaldset(a,m,c)ISVALDSET Test whether the argument is a valid dataset
kcentres(d,k,n)KCENTRES Finds K center objects from a distance matrix
kernelEVD(X)KERNELEVD (kernel eigenvalue decomposition) performs a singular value decomposition
kernelc(varargin)KERNELC Arbitrary kernel/dissimilarity based classifier
kernelm(varargin)KERNELM Trainable kernel mapping, dissimilarity representation
klldc(a,n)KLLDC Linear classifier built on the KL expansion of the common covariance matrix
klmKLM Karhunen-Loeve Mapping (PCA or MCA of mean covariance matrix)
klms(a,n)KLMS Karhunen Loeve Mapping, followed by scaling
kmeans(a,kmax,maxit,init,...KMEANS k-means clustering
knn_map(T,W)KNN_MAP Map a dataset on a K-NN classifier
knnc(a,knn)KNNC K-Nearest Neighbor Classifier
knnm(varargin)KNNM Trainable K-Nearest Neighbour density estimation
knnr(varargin)KNNR Trainable Nearest Neighbor Regression
ksmoothr(varargin)KSMOOTHR Kernel smoother
kur_nw(x0,mode)
kur_rcex(x,mode)
labcmp(lab1,lab2)LABCMP Compare label sets
labeld(a,w,thresh)LABELD Find labels of classification dataset (perform crisp classification)
labeld(varargin)LABELD Fixed mapping finding labels of classification dataset
labelim(a)LABELIM Construct image of object (pixel) labels
lassor(varargin)LASSOR Trainable mapping for LASSO regression
ldc(varargin)LDC Linear Bayes Normal Classifier (BayesNormal_1)
libra_mahalanobis(x,locvc...MAHALANOBIS computes the distance of each observation in x
libra_ols(x,y,varargin)OLS is the classical least squares estimator for multiple
libsvc(varargin)LIBSVC Trainable classifier: LIBSVM
libsvmcheckLIBSVMCHECK
Check whether the LIBSVM toolbox is in the path
linearr(varargin)LINEARR Trainable mapping for linear regression
lines5d(N)LINES5D
Generates three 5-dimensional lines
linewidth(width)LINEWIDTH Set linewidth in plot
list_all_ECGtask()List al ECGtask availables
lkc(varargin)LKC Trainable linear kernel classifier
lmc(x)LMC calculates the left medcouple, a robust measure of
lmnc(varargin)LMNC Levenberg-Marquardt trained feed-forward neural net classifier
logdens(w)LOGDENS Force density based classifiers to use log-densities
logit_function( x )(Internal) Logit function
loglc(a)LOGLC Trainable logistic linear classifier
loglc(a)LOGLC Logistic Linear Classifier
loso(a,classf,set_lab,set...LOSO
Leave_One_Set_Out crossvalidation
lsscatter(x,y,fitted,attrib)LSSCATTER makes a scatter plot with regression (LTS/LS) line
lssvc(A, TYPE, PAR, C)LSSVC Least-Squares Support Vector Classifier
ltsregres(x,y,varargin)LTSREGRES carries out least trimmed squares (LTS) regression, introduced in
madc(x)MADC is a scale estimator given by the Median Absolute Deviation
makeplot(out,varargin)MAKEPLOT makes plots for the main functions. These figures can also be obtained
map(a,b)MAP Map a dataset, train a mapping or classifier, or combine mappings
mapex(p1,varargin)MAPEX Train and execute arbitrary untrained mapping
mapm(varargin)MAPM Mapping to execute arbitray Matlab function on dataset
mapping_task(argin,task)MAPPING_TASK Find task of actual mapping call
marksize(siz,marker)MARKSIZE Change markersize in lineplot or scatterplot
matchcost(orglablist,cost...Matchcost
matchlab(lab1,lab2)MATCHLAB Compare two labellings and rotate the labels for an optimal match
matchlab_new(lab1,lab2)MATCHLAB Compare two labellings and rotate the labels for an optimal match
matchlablist(lablist1,lab...MATCHLABLIST Match entries of lablist1 with lablist2
matrix2positions(pos_matr...(Internal) Convert matrix of ECG wave annotations to a struct position format, used in wavedet algorithm
max_index(vec)(Internal) Index of the maximum element in a vector
max_kur(x,d0,maxit,show)
maxc(p1)MAXC Maximum combining classifier
maximize(fig)MAXIMIZE Size a window to fill the entire screen.
mc(x)MC calculates the medcouple, a robust measure of skewness.
mcdcov(x,varargin)MCDCOV computes the MCD estimator of a multivariate data set.
mcdregres(x,y,varargin)MCDREGRES is a robust multivariate regression method. It can handle multiple
mcenter(x)MCENTER mean-centers the data matrix x columnwise
mclassc(varargin)MCLASSC Computation of multi-class classifier from 2-class discriminants
mclassm(varargin)MCLASSM Computation of a combined, multi-class based mapping
mds(varargin)MDS Trainale mapping for multidimensional scaling, a variant of Sammon mapping
mds_csMDS_CS Trainable mapping for classical scaling
mds_init(D,n,initm)MDS_INIT Initialization for MDS (variants of Sammon) mapping
mds_stressMDS_STRESS - Sammon stress between dissimilarity matrices
mdsc(varargin)MDSC Trainable classifier for Manhatten Dissimilarity Space
meanc(p1)MEANC Mean combining classifier
meancov(varargin)MEANCOV Fixed mapping estimating means and covariances of multiclass data
meancov_new(a,n)MEANCOV Estimation of the means and covariances from multiclass data
mediancMEDIANC Median combining classifier
min_index(vec)(Internal) Index of the minimum element in a vector
min_kur(x,d0,maxit,show)
minc(p1)MINC Minimum combining classifier
minimize(X, f, length, va...Minimize a differentiable multivariate function.
misval(varargin)MISVAL Fixed mapping handling the missing values in a dataset
mixartif(struct_in, ECG_h...Create an artificial set of QRS detections, based on multilead QRS detections.
mlochuber(x,varargin)MLOCHUBER is an M-estimator of location with psi-function equal to
mloclogist(x,varargin)MLOCLOGIST is an M-estimator of location with psi-function equal to
mlr(x,y,varargin)MLR is the classical least squares estimator for multivariate multiple
mlrc(A)MLRC Muli-response Linear Regression Combiner
modeclust(a,K)MODECLUST KNN mode-seeking clustering
modeseekMODESEEK Clustering by mode-seeking
modselc(par1,par2,par3,par4)MODSELC Model selection
mogc(a,n,r,s)MOGC Mixture of Gaussian classifier
mogc(varargin)MOGC Trainable classifier based on Mixture of Gaussians
mona(x,banner)MONA returns clusters according to mona (monothetic
mscalelogist(x,varargin)MSCALELOGIST is an M-estimator of scale with psi-function equal to
my_colormap( cant_colors )(Internal) Create a colormap for signal visualization
my_concatenate_mean(plA, ...
my_finish_mean(payload, E...
my_mean(x)
my_remclass(a,n)REMCLASS Remove small classes
myfixedmapping(varargin)MYFIXEDMAPPING Skeleton for a user supplied fixed mapping
myzerocros(x)(Internal) Detect zero-crosses in a signal
naivebc(varargin)NAIVEBC Naive Bayes classifier
naivebcc(A,W)NAIVEBCC Naive Bayes Combining Classifier
nancov(x,varargin)NANCOV Covariance matrix, ignoring NaNs.
nanmax(varargin)NANMAX Maximum value, ignoring NaNs.
nanmean(x,dim)NANMEAN Mean value, ignoring NaNs.
nanmeda(data)(Internal) Calculate the median of absolute deviations from the median (MEDA)
nanmedian(x,dim)NANMEDIAN Median value, ignoring NaNs.
nanmin(varargin)NANMIN Minimum value, ignoring NaNs.
nanstd(varargin)NANSTD Standard deviation, ignoring NaNs.
nansum(x,dim)NANSUM Sum, ignoring NaNs.
nanvar(x,w,dim)NANVAR Variance, ignoring NaNs.
nbayesc(U,G)NBAYESC Bayes Classifier for given normal densities
neurcNEURC Automatic neural network classifier
newfig(fign,n)NEWFIG Create new figure on given position
newlineNEWLINE The platform dependent newline character
newlineNEWLINE The platform dependent newline character
newlineNEWLINE The platform dependent newline character
nfminbnd(fun,n1,n2,iterma...NFMINBND Private routine for optimizing integer complexity /
nlabcmp(S1,S2)NLABCMP Compare two label lists and count the differences
nlabeld(a,w)NLABELD Return numeric labels of classified dataset (c
nlfisherm(a,n)NLFISHERM Non-linear Fisher Mapping according to Marco Loog
nmc(varargin)NMC Nearest Mean Classifier
nmsc(varargin)NMSC Nearest Mean Scaled Classifier
nodatafile(a)NODATAFILE Error return in case of datafile
normal_map(varargin)NORMAL_MAP Map a dataset on normal-density classifiers or mappings
normal_map_new(A,W)NORMAL_MAP Map a dataset on normal-density classifiers or mappings
normal_map_new(varargin)NORMAL_MAP Map a dataset on normal-density classifiers or mappings
normalize(A, dim)Make the entries of a (multidimensional) array sum to 1
normm(varargin)NORMM Fixed mapping for Minkowski-P distance normalization
normqqplot(y,class)NORMQQPLOT produces a Quantile-Quantile plot in which the vector y is plotted against
nu_svcr(a,type,par,C,svr_...NU_SVR Support Vector Classifier: NU algorithm
nu_svro(K,y,C,svr_type,nu...NU_SVRO Support Vector Optimizer
nulibsvc(varargin)NULIBSVC Trainable classifier: LIBSVM, nu-algorithme
nusvc(a,kernel,nu,Options)NUSVC Support Vector Classifier: NU algorithm
nusvc(varargin)NUSVC Trainable classifier: Support Vector Machine, nu-algorithme
nusvc_new(a,kernel,nu,Opt...NUSVC Support Vector Classifier: NU algorithm
nusvo(K,y,nu,Options,arg)NUSVO Support Vector Optimizer: NU algorithm, low-level routine
nusvo(K,y,nu,Options,arg)NUSVO Support Vector Optimizer: NU algorithm
nusvo_new(K,y,nu,Options,...NUSVO Support Vector Optimizer: NU algorithm
obj2feat(a)OBJ2FEAT Transform object images to feature images in dataset
objfun2(X,C,weight)error matrix to minimize: to find direction and point
optimline(pontos,weight,o...
out2(par1,par2)OUT2 Mapping that returns second output of input mapping
outm(varargin)OUTM Mapping that reorders outputs of input mapping
pack_signal(signal, anns_...(Internal) Pack a signal in a realization array, based on a sync. signal and a time window around.
pam(x,kclus,vtype,stdize,...PAM is the Partitioning Around Medoids clustering algorithm.
parallelPARALLEL Combining classifiers in different feature spaces
parsc(w,space)PARSC Parse classifier
parse_pids( aux_str )(Internal) Identify how many PIDs are in total and which is this PID, based on a string formatted this_pid/cant_pids
parzen_map(b,w)PARZEN_MAP Map a dataset on a Parzen densities based classifier
parzenc(varargin)PARZENC Optimisation of the Parzen classifier
parzendc(varargin)PARZENDC Trainable classifier based on Parzen density estimation
parzenm(varargin)PARZENM Trainable mapping for estimating Parzen densities
parzenml(A,fid)PARZENML Optimum smoothing parameter in Parzen density estimation.
pcaPCA Principal component analysis (PCA or MCA on overall covariance matrix)
pcaklmPCAKLM Principal Component Analysis/Karhunen-Loeve Mapping
pcam(varargin)PCAM Principal component analysis (PCA or MCA on overall covariance matrix)
pcldc(a,n)PCLDC Linear classifier using PC expansion on the joint data.
pd_check(a)PD_CHECK Check whether the input matrix is positive definite
pd_check(a)PD_CHECK Check whether the input matrix is positive definite
pdf2eps(source, dest)PDF2EPS
Convert a pdf file to eps format using pdftops
pdftops(cmd)PDFTOPS
Calls a local pdftops executable with the input command
perc(p1,par)PERC Percentile combining classifier
perlcPERLC - Trainable linear perceptron classifier
picant(sig,time)This function calculates the first peak of signal sig nearest to the end
picpost(sig,time)This function calculates the first peak of signal sig nearest to the beginning
pinvr(a,type,par,eps_tol,...PINVR PSEUDO-INVERSE REGRESSION (PCR)
pklibsvc(varargin)PKLIBSVC Automatic radial basis SVM, using nu_libsvc and the Parzen kernel
plot_auc( areas, pvalues,...(Internal) Plot the area under the ROC curve
plot_ecg_heartbeat(ECG, l...(Internal) obsolete, use plot_ecg_strip
plot_ecg_mosaic( ECG, var...Plots multidimentional signal in mosaic style
plot_ecg_strip( ECG, vara...Plots and interact with ECG signal
plot_roc( roc_array, strT...(Internal) Plot the ROC curve
plotc(w,varargin)PLOTC Plot classifiers
plotc(w,varargin)PLOTC Plot classifiers
plotc(w,varargin)PLOTC Plot classifiers
plotd(varargin)PLOTD Plot classifiers, outdated, use PLOTC instead
plotdg(varargin)PLOTDG Plot dendrogram
plote(varargin)PLOTE Plot error curves
plotf(a,n,z)PLOTF Plot feature distribution, special version
plotgtmPLOTGTM
Plot a trained GTM mapping in 1D, 2D or 3D
plotm(w,arg2,n,cnd)PLOTM Plot mapping values, contours or surface
plotm(w,arg2,n,cnd)PLOTM Plot mapping values, contours or surface
plotm(w,arg2,n,cnd)PLOTM Plot mapping values, contours or surface
plotnumbers(x,y,number1,n...PLOTNUMBERS marks the points (x,y,z) on a plot with their index number.
ploto(a,p)PLOTO Plot objects as 1-D functions of the feature number
plotr(w,clrs)PLOTR Plot regression
plotsom(W)PLOTSOM Plot the Self-Organizing Map in 2D
plottarget(x,clrs)SCATTERR Scatter regression data
pls_apply(X,B,Options)pls_apply
Partial Least Squares (applying)
pls_prepro(X,centering,sc...[X,centering,scaling] = pls_prepro(X,centering,scaling, flag)
pls_train(X,Y,Options)pls_train Partial Least Squares (training)
pls_transform(X,R,Options)PLS_TRANSFORM
Partial Least Squares transformation
pls_updstruct(OldStructur...% Structure update
plsm(par1,par2,par3)PLSM Partial Least Squares Feature Extraction
plsm(par1,par2,par3)PLSR Partial Least Squares Regression
polyc(a,classf,n,s)POLYC Polynomial Classification
pos2ann(pos)function to convert the position structure to a MIT annotation structure
positions2matrix(this_pos...(Internal) Convert matrix of ECG wave annotations to a struct position format, used in wavedet algorithm
posmat(ann)function POS=posmat(ann) generates a Waveform Limit MATRIX with annotation ann
ppval(pp,xx)PPVAL
Evaluate piecewise polynomial.
pr_newrb(varargin)
prarff(file)PRARFF COnvert ARFF file into PRTools dataset
prcov(varargin)PRCOV Call to COV() including PRWAITBAR
prcrossval(data,classf,n,...PRCROSSVAL Error/performance estimation by cross validation (rotation)
prcursor(h,event_obj)PRCURSOR Show object ident.
prdata(file,labels)PRDATA Read data files
prdatafiles(dfile,siz,url)PRDATAFILES Checks availability of a PRTools datafile (PRTools5 version!)
prdataset(name,M,N,no_mes...PRDATASET Load and convert dataset from disk
prdatasets(dset,siz,url)PRDATASET Checks availability of a PRTOOLS dataset (PRTools5 version!)
prdebug(s)
prdebug(s)
prdownload(url,dirname,siz)PRDOWNLOAD Download well defined data and toolboxes
predict(x,y,inmodel)PREDICT is a function which computes regression results for new data based on
preig(A)PREIG Call to EIG() including PRWAITBAR
prepareArgs(args)Convert a struct into a name/value cell array for use by process_options
prforum(k)PRFORUM
prglobal(varargin)PRGLOBAL Define or reset PRTools globals
primport(a)PRIMPORT import the old-format prtools datasets
print2array(fig, res, ren...PRINT2ARRAY
Exports a figure to an image array
prinv(A)PRINV Call to INV() including PRWAITBAR
prkmeans(a,varargin)PRKMEANS PRTools k-means clustering
prload(file,varargin)PRLOAD Similar to LOAD matfile, but converts old datasets, datafiles, mappings
prmap(a,b)PRMAP Map a dataset, train a mapping or classifier, or combine mappings
prmem(m,k)PRMEM Size of memory and loops for intermediate results
prmem(m,k)PRMEM Size of memory and loops for intermediate results
prmemory(n_in)PRMEMORY Set/get size of memory usage
process_options(args, var...Process named arguments to a function
procm(varargin)PROCM Fixed-cell mapping to execute arbitray Matlab function on objects
prodc(p1)PRODC Product combining classifier
proxm(varargin)PROXM Proximity mapping
prpinv(A)PRPINV Call to PINV() including PRWAITBAR
prplotsom(W)PLOTSOM Plot the Self-Organizing Map in 2D
prprogress(par,varargin)PRPROGRESS Report progress of some PRTools iterative routines
prrank(varargin)PRRANK Call to RANK() including PRWAITBAR
prroc(a,w,clas,n)PRROC Receiver-Operator Curve
prroc_new(a,w,clas,n)PRROC Receiver-Operator Curve
prsvd(varargin)PRSVD Call to SVD() including PRWAITBAR
prtools4to5(dirin,dirout)PRTOOLS4TO5
prtools_modPRTOOLS_MOD Read PRTools Message Of the Day
prtools_modPRTOOLS_MOD Read PRTools Message Of the Day
prtrace(message,level)PRTRACE Trace PRTools routines
prtverPRTVER Get PRTools version
prversion(location)PRVERSION PRtools version number
prversion(location)PRVERSION PRtools version number
prwaitbar(n,m,text)PRWAITBAR Report PRTools progress by single waitbar
prwaitbarinit(ss,n)PRWAITBARINIT Low level routine to simplify PRWAITBAR init
prwaitbarnext(n,ss,count)PRWAITBARNEXT Low level routine to simplify PRWAITBAR next calls
prwaitbaronce(ss,par)PRWAITBARONCE Generate single prwaitbar message
prwarningPRWARNING Show PRTools warning
putlabel(x,y,names,z,znames)PUTLABEL plots user-specified labels to the observations in a two- or
qdc(varargin)QDC Quadratic Bayes Normal Classifier (Bayes-Normal-2)
qdc_new(a,r,s,dim)QDC Quadratic Bayes Normal Classifier (Bayes-Normal-2)
qdc_new1(a,r,s,dim)QDC Quadratic Bayes Normal Classifier (Bayes-Normal-2)
qn(x)QN is a scale estimator which does not require an auxiliary location estimate.
qnm(x)QNM is a scale estimator which does not require an auxiliary location estimate.
qrscandidatesnew(timeqrs1...[timeqrs,indexes]=qrscandidates(timeqrs1,timeqrs2,timeqrs3,heasig,tol)
qs_wt(x, scales, fs, q_fi...(Internal) Calculates the wavelet transform
quadrc(varargin)QUADRC Trainable quadratic classifier
rand_linespec()(Internal) Example of user-created QRS detector
randomforestc(varargin)RANDOMFORESTC Breiman's random forest
randomset(tot,nel,seed)RANDOMSET draws randomly a subsample of nel cases out of tot.
randreset(state)RANDRESET
Reset state of random generators
randsample(n, k, varargin)RANDSAMPLE Random sample, with or without replacement.
rapca(data,varargin)RAPCA is a 'Reflection-based Algorithm for Principal Components Analysis'.
rblibsvc(a,sig)RBSVC Trainable automatic radial basis Support Vector Classifier by LIBSVM
rbmBB(X, numhid, varargin)Learn RBM with Bernoulli hidden and visible units
rbmPredict(model, testdata)Use RBM to predict discrete label for testdata
rbmVtoH(model, v)go from visible to hidden based on type
rbnc(varargin)RBNC Trainable radial basis neural network classifier
rbsvc(a,sig)RBSVC Trainable automatic radial basis Support Vector Classifier
rda(x,group,varargin)RDA performs linear and quadratic robust discriminant analysis
readECG_v1(sampling_rate,...
read_310_format( filename...(Internal) Read the MIT 310 format
read_311_format( filename...(Internal) Read the MIT 311 format
read_AHA_ann( filename, s...Reads ECG annotations in AHA format
read_AHA_format( filename...Reads ECG recording in AHA format
read_AHA_header(filename)Reads ECG header in AHA format
read_ECG(recording_name, ...Reads an ECG recording
read_Mortara( filename, s...(Internal) Reads ECG recordings in Mortara format
read_Mortara_format( file...Reads ECG recordings in Mortara format.
read_Mortara_header( file...Reads ECG header in Mortara format.
read_hl7a_format(filename...Reads ECG recording in HL7a format
read_ishne_ann( ann_filen...Reads ECG annotations from ISHNE format
read_write_entire_textfil...READ_WRITE_ENTIRE_TEXTFILE Read or write a whole text file to/from memory
readheader(hea_full_filen...(Internal) function reads the header of signal files
reducm(a)REDUCM Reduce to minimal space
regoptc(a,classf,parms,de...REGOPTC Optimise regularisation and complexity parameters by crossvalidation
regresdiagplot(xdist,ydis...REGRESDIAGPLOT makes a regression outlier map.
regresdiagplot3d(sdist,od...REGRESDIAGPLOT3D is a 3D-outlier map which visualizes the orthogonal distance,
reject(A,W)REJECT Compute the error-reject trade-off curve
rejectc(a,w,frac,type)REJECTC Construction of a rejecting classifier
rejectc_balanced(a,w,frac...REJECTC Construction of a rejecting classifier
rejectm(varargin)REJECTM Trainable mapping to compute rejection threshold
rejectm_balanced(a,thr,re...REJECTM Rejection mapping
remclass(varargin)REMCLASS Fixed mapping to remove small or empty classes
remoutl(varargin)REMOUTL Fixed mapping for removing outliers
removal(X,r,k)REMOVAL deletes rows(r) or columns(k) from X
removeObsMcd(data,i,input...REMOVEOBSMCD is an auxiliary function to perform cross-validation with MCD
removeObsRobpca(data,i,k,...REMOVEOBSROBPCA is an auxiliary function to perform cross-validation with ROBPCA,
renumlab(slab1,slab2)RENUMLAB Renumber labels
reorderclasses(x,lablist)REORDERCLASSES Reorder the lablist
reorderdset(a,L,flag)REORDERDSET
reportECG(ECG_w, detailLe...(Internal) function reads the header of signal files
reportECG(ECG_w, detailLe...This function creates a report of the signals handled by the ECG wrapper
residualplot(x,residuals,...RESIDUALPLOT plots the residuals from a regression analysis versus x
resize(A,k,n,m)
resize(A,k,n,m)
resizem(a,imsize,method)RESIZEM Mapping for resizing object images in datasets and datafiles
ridger(varargin)RIDGER Trainable mapping for ridge regression
rmanot(ann,vec)function ann=rmanot(ann,vec) removes annotations in vec from annotation structure
rmc(x)RMC calculates the right medcouple, a robust measure of
rnnc(a,n,s)RNNC Random Neural Net classifier
robpca(x,varargin)ROBPCA is a 'ROBust method for Principal Components Analysis'.
robpcaregres(x,y,w,cutoff...ROBPCAREGRES is a function for robust multivariate regression, based on
robstd(x,varargin)ROBSTD standardizes a matrix X columnwise by substracting a robust estimate
roc(a,w,clas,n)ROC Receiver-Operator Curve
roc(a,w,clas,n)ROC Receiver-Operator Curve
roc_detection(a,n)ROC Receiver-Operator Curve
rotateticklabel(h,rot)ROTATETICKLABEL rotates tick labels
rowvec(x)(Internal) Reshape a matrix into a row vector
rpcr(x,y,varargin)RPCR is a 'Robust Principal Components Regression' method based on ROBPCA.
rrmse(x,y,h,kmax,attrib,p...RRMSE calculates the robust RMSECV and/or the robust RMSEP-value
rsimca(x,group,varargin)RSIMCA performs a robust version of the SIMCA method. This is a classification
rsimpls(x,y,varargin)RSIMPLS is a 'Robust method for Partial Least Squares Regression based on the
rsquared(x,w)RSQUARED R^2 statistic
rsquared(x,y,kmax,method,h)RSQUARED calculates the R-squared value of the robust or classical PCR/PLS analysis. This function
rsscc(varargin)RSSCC Trainable random subspace combining classifier
rstep(X,k,center,r)RSTEP is an auxiliary function for 'rapca.m'.
runcells(command,varargin)RUNCELLS Run command for all cell elements of first parameter
sammonm(varargin)SAMMONM Sammon mapping
savedatafile(dfile_in,fea...SAVEDATAFILE Save datafile
scalem(varargin)SCALEM Compute scaling map
scatterd(a,p1,p2,p3,p4,p5...SCATTERD Display scatterplot
scatterd(varargin)SCATTERD Display scatterplot
scatterduiSCATTERDUI Scatter plot with user interactivity
scattern(varargin)SCATTERN Simple 2D scatterplot of dataset without axis annotation
scorediagplot(Xdist,Odist...SCOREDIAGPLOT plots the score outlier map. The score distances (SD) and
screeplot(vec,attrib,lev)SCREEPLOT draws the eigenvalues of the covariance matrix of the data in decreasing order.
searchbkperforms the searching back when no qrs has been detected for
second_simple_example(pid...Very simple example of how to use the ecg-kit in a cluster
selclass(varargin)SELCLASSFixed mapping for selecting a single class from a dataset
seldat(varargin)SELDAT Mapping selecting a subset of dataset
selectim(a,n)SELECTIM Select one or more images in multiband image or dataset
sequential(w1,w2,w3)SEQUENTIAL Sequential mapping
set_a_linespec(line_hdl, ...(Internal) Set a series of properties to a line handle
set_rand_linespec(line_hd...(Internal) Set random properties a line handle
setbatch(varargin)SETBATCH Enables/diasables execution in batch mode of mappings
setdat(a,b,w)SETDAT Reset data and feature labels of dataset for classification output
setdata(a,b,varargin)SETDATA Dummy routine for setdata for doubles
setdefaults(parin,varargin)SETDEFAULTS Set defaults for function parameters
setfeatsize(varargin)SETFEATSIZE Fixed mapping, (re)set the feature size of a dataset
setname(varargin)SETNAME Fixed mapping for easy name setting
shiftargin(argin,type,npar)SHIFTARGIN Shift input arguments conditionally
shiftop(d,e,n)SHIFTOP Shift operating point of classifier
show(varargin)SHOW PRTools general show
showfigs(k)SHOWFIGS Show all figures on the screen
sigmSIGM Sigmoid map
signaltest(x,step,mode,th1)% detecting severe quality loss in ECG
simcaplot(result)SIMCAPLOT plots a scatter plot with the boundaries defined by the SIMCA method.
similarity_calculation(si...(Internal) Pattern matching function to be used in an arbitrary task
simulink2svgShow the hidden handles to get access to the simulink figures
sincronizabeats(beats, QR...This function sincronizes a set of marks from diferent delineation
soft_intersect( val1, val...(Internal) Intersection of two sets with tolerance
soft_range_conversion( x,...(Internal) Convert an input range to an output range with a soft function
soft_set_difference( val1...(Internal) Set difference with tolerance
som(a,k,nrruns,eta,h)SOM Simple routine computing a Self-Organizing Map (SOM)
spatm(a,s)SPATM Augment image dataset with spatial label information
spirals(M,N)SPIRALS 194 objects with 2 features in 2 classes
stacked(varargin)STACKED Combining classifiers in the same feature space
stamp_map(a,b)
statscheckSTATSCHECK
Check whether the STATS toolbox is in the path
statsdtc(varargin)STATSDTC Stats Decision tree Classifier (Matlab Stats Toolbox)
statsknnc(varargin)STATSKNNC Stats KNN Classifier (Matlab Stats Toolbox)
statslinc(varargin)STATSLINC Stats Linear Classifier (Matlab Stats Toolbox)
statsnbc(varargin)STATSNBC Stats Naive Bayes Classifier (Matlab Stats Toolbox)
strlab(lab1)STRLAB Make sure labels are strings
strlab(lab1)STRLAB Make sure labels are strings
stumpc(varargin)STUMPC Decision stump classifier
subsc(varargin)SUBSC Subspace Classifier
svc(varargin)SVC Trainable classifier: Support Vector Machine
svc_nu(a,type,par,nu,mc,pd)SVC_NU Support Vector Classifier: NU algorithm
svgAnimation(s, type, key...
svgBoundingBox(s, type, o...Configures the bounding box of a SVG filter
svgClipping(s, path)Adds a clipping path
svgComposite(s, source1, ...Adds a feComposite SVG filter
svgDisplacementMap(s, sou...Adds a feDisplacementMap SVG filter
svgFlood(s, color, opacit...Adds a feFlood SVG filter
svgGaussianBlur(s, source...Adds a feGaussianBlur SVG filter
svgImage(s, file, aspectR...Adds a feImage SVG filter
svgLuminanceToAlpha(s, so...Adds a feColorMatrix SVG filter that maps luminance to alpha values
svgMorphology(s, source, ...Adds a feMorphology SVG filter
svgOffset(s, source, offs...Adds a feOffset SVG filter
svgSpecularLightingDistan...Adds a feSpecularLighting SVG filter with distant light source
svgTile(s, source, result)Adds a feTile SVG filter
svgTurbulence(s, frequenc...Adds a feTurbulence SVG filter
svmr(varargin)SVMR SVM regression
svo(K,y,C,Options)SVO Support Vector Optimizer, low-level routine
svo_nu(K,y,nu,pd)SVO_NU Support Vector Optimizer: NU algorithm
sys_cmd_separation_string()String to issue multiline system commands
sys_command_strings()Strings to execute typical I/O commands via system calls
testauc(varargin)TESTAUC Multiclass error area under the ROC
testc(a,w,type,label)TESTC Test classifier, error / performance estimation
testcost(x,w,C,lablist)TESTCOST compute the error using the cost matrix C
testd(a,w)TESTD Find classification error of dataset applied to given classifier
testdatasize(a,type,flag)TESTDATASIZE of datafiles and convert to dataset
testk(a,knn,t)TESTK Error estimation of the K-NN rule
testn(w,U,G,m)TESTN Error estimate of discriminant for normal distribution.
testp(a,h,t)TESTP Error estimation of Parzen classifier
testr(varargin)TESTR MSE for regression
text_arrow( x, y, text_st...(Internal) Plot an arrow with text in a graphic
text_line( x, y, text_str...(Internal) Plot a line with text in a graphic
traincc(a,w,cclassf)TRAINCC Train combining classifier if needed
trained_classifier(varargin)TRAINED_MAPPING Define untrained or fixed mapping
trained_mapping(varargin)TRAINED_MAPPING Define trained mapping
tree(objectorder,heights)TREE creates a tree in which the leaves represent
tree_map(T,W)TREE_MAP Map a dataset by binary decision tree
treec(varargin)TREEC Trainable decision tree classifier
trim_ECG_header( ECG_head...(Internal) Trim a header info struct to a subset of signals
tsnem(varargin)TSNEM tSNE mapping
tutorial_filtersa) Original plot with a line, patch, and text object
twave3D(w,timenew,i,freq,...%[pos,picon,picoff,janelas]=twave3D(w,timenew,i,freq,S,QRSoff,samp,rrmed)
twopoints(data,ndirect,seed)TWOPOINTS calculates ndirect directions through two randomly chosen data points from data.
txtread(file,n,nstart)TXTREAD Read text file
typp(file)TYPP list M-File of PRTools
udc(a)UDC Uncorrelated normal based quadratic Bayes classifier (BayesNormal_U)
unimcd(y,h)UNIMCD computes the MCD estimator of a univariate data set.
unique_w_tolerance( val1,...(Internal) Find unique elements in a vector within a win_size tolerance window
uniran(seed)UNIRAN is the uniform random generator used in mcdcov.m and ltsregres.m
unitmUNITM Fixed unit mapping
unittmUNITTM Trainable unit mapping
updatecov(data,covar,mu,a...This function updates the mean and covariance matrix of the full data
updstruct(OldStructure, N...% Structure update
use_old_mapping_times(flag)USE_OLD_MAPPING_TIMES
user_string(string_name, ...USER_STRING
Get/set a user specific string
userkernel(a,r,kernel,var...USERKERNEL Construct user defined kernel mapping
using_hg2(fig)USING_HG2 Determine if the HG2 graphics pipeline is used
val_kur(x,d,km)
vandermondem(varargin)VANDERMONDEM Fixedd mapping, extend data matrix
votec(p1)VOTEC Voting combining classifier
vpc(A, W)VPC Voted perceptron classifier
wavedetMix(struct_in, ECG...Create an artificial set of QRS detections, based on multilead QRS detections created with wavedet algorithm.
wavedet_3D(sig_all, ext_a...[position,positionaux,messages] =wavedet_3D(sigdir,headir,matdir,ecgnr,ft,anot,lead,t,qrs_flag,anot_fmt,aname,dirann)
wavedet_interface(ECG_sig...corresponding respectively to P onset, P peak, P end, QRS onset, QRS
weakc(varargin)WEAKC Weak Classifier
weighted_ldc(a, r, s, dim...LDC Linear Bayes Normal Classifier (BayesNormal_1)
weighted_qdc(dsAs)LDC Linear Bayes Normal Classifier (BayesNormal_1)
weightmecov(data,weights)WEIGHTMECOV computes the reweighted mean and covariance matrix of multivariate data.
woody_method(signal, anno...(Internal) Woody algorithm for heartbeat allignment
wvotec(a,v)WVOTEC Weighted combiner (Adaboost weights)
xml_tag_value(element, ta...(Internal) Checks (tagName, tagValue) in an XML node "element"
prdatafile.mPRDATAFILE Datafile class constructor. This is an extension of PRDATASET.
prdataset.mPRDATASET Dataset class constructor
prmapping.mPRMAPPING Mapping class constructor
ECGtaskDefines the class interface for the ECGtask derived classes
ECGtaskDefines the class interface for the ECGtask derived classes
ECGtask_Delineation_corre...ECGtask for ECGwrapper (for Matlab)
ECGtask_ECG_delineationECGtask for ECGwrapper (for Matlab)
ECGtask_ECG_delineation_c...ECGtask for ECGwrapper (for Matlab)
ECGtask_PCA_proj_basisECGtask for ECGwrapper (for Matlab)
ECGtask_PPG_ABP_correctorECGtask for ECGwrapper (for Matlab)
ECGtask_PPG_ABP_detectorECGtask for ECGwrapper (for Matlab)
ECGtask_QRS_correctorECGtask for ECGwrapper (for Matlab)
ECGtask_QRS_detectionECGtask for ECGwrapper (for Matlab)
ECGtask_QRS_detections_po...ECGtask for ECGwrapper (for Matlab)
ECGtask_arbitrary_functionECGtask for ECGwrapper (for Matlab)
ECGtask_classification_fe...ECGtask for ECGwrapper (for Matlab)
ECGtask_do_nothingNull ECGtask (for Matlab)
ECGtask_heartbeat_classifierECGtask for ECGwrapper (for Matlab)
ECGwrapperAllow acces to ECG recordings of arbitrary format and length.
featureMatricesfeatureMatrices object for ECGwrapper
progress_bar(Internal) A progress bar class for showing evolution of a process to users
a2hbc_header.mmaxQRSxIter: Maximum amount of heartbeats in ECG recordings of 2 leads
DisableControPanel.m
DisplayConfiguration.m
EnableControPanel.m
FindClusterExamples.mcentroid idx is the first
ParseUserControlPanelInput.m
position_waitbar.m
UserControlPanel.mopen a waitbar
UserInteraction.m
Contents.mCOMMON
ecgkit_wave_defs.m(Internal) Wave definitions for ECG delineators used in the toolbox
matformat_definitions.m(Internal) A definition or header file, for names allowed for signals, header and annotations included in MAT format files
demo_3d_plot2svg.m
progress_bar_ex.mA progress bar class example
Contents.mPattern Recognition Tools ()
datafiles.mDATAFILES Info on the datafile class construction for PRTools
datasets.mDATASETS Info on the dataset class construction for PRTools
delfigs.mDELFIGS Delete all figures
makeqld.mMAKEQLD
mappings.mMAPPINGS Info on the mapping class construction of PRTools
mappingtools.mMAPPINGTOOLS Macro defining some mappings:
multi_labeling.mMULTI_LABELING Info on the PRTools multiple labeling system.
prex_cleval.mPREX_CLEVAL
PRTools example on learning curves
prex_combining.mPREX_COMBINING
PRTools example on classifier combining
prex_confmat.mPREX_CONFMAT PRTools example on confusion matrix, scatterplot and gridsize
prex_cost.mPREX_COST PRTools example on cost matrices and rejection
prex_datafile.mPREX_DATAFILE
PRTools example of the datafile usage
prex_datasets.mPREX_DATASETS
PRTools example of the standard datasets
prex_density.mPREX_DENSITY Various density plots
prex_eigenfaces.mPREX_EIGENFACES
PRTools example on the use of images and eigenfaces
prex_logdens.mPREX_LOGDENS PRTools example on density based classifier improvement
prex_matchlab.mPREX_MATCHLAB
PRTools example on K-MEANS clustering and matching labels
prex_mcplot.mPREX-MCPLOT
PRTools example on a multi-class classifier plot
prex_mds.mPREX_MDS
PRTools example on multi-dimensional scaling
prex_parzen.mPREX_PARZEN Parzen based denisities and classifiers
prex_plotc.mPREX_PLOTC
PRTools example on the dataset scatter and classifier plot
prex_regr.mPREX_REGR PRTools regression example
prex_silhouette_classific...PREX_SILHOUETTE_CLASSIFICATION PRTools introductory example
prex_soft.mPREX_SOFT Simple example of handling soft labels in PRTools
prex_som.mPREX_SOM
PRTools example on training SelfOrganizing Maps
prex_spatm.mPREX_SPATM
PRTools example on spatial smoothing of image classification
prnews.mPRNEWS Opens browser with PRTools news
prtest.mPRTEST test routine for PRTools commands
prtestc.mPRTESTC Test routine for the PRTOOLS classifier
prtestf.mPRTESTF Test feature selection
svcinfo.mSVCINFO More information on Support Vector Classifiers
tablas_y_constantes.m
how_to_use.mexamples of wavedet_3D usage
pwave_task1.mscript which identifies P wave, as well as its onset and offset
t5.mscript which used ascale 5 in T wave delineation
Tbeginauxiliar.mscript which part of multilead T wave onset delineation
writeannot.m(Internal) Write annotation files for biomedical signals in MIT Format. (MEX file)
Contents.mECGKIT
Description
This toolbox is a collection of Matlab tools that I used, adapted or developed during my PhD and post-doc work with the Besicos group at University of Zaragoza, Spain and at the National Technological University of Buenos Aires, Argentina. The ecg-kit has tools for reading, processing and presenting results. The main feature of the this toolbox is the possibility to use several popular algorithms for ECG processing, such as:
- Algorithms from Physionet's WFDB software package
- QRS detectors, such as gqrs, wqrs, wavedet, ecgpuwave, Pan & Tompkins, EP limited
- Wavedet ECG delineator
- Pulse wave detectors as wabp and wavePPG
- a2hbc and EP limited heartbeat classifiers.
And other scritps for inspecting, correcting and reporting all these results.
Required Products
MATLAB release
MATLAB 8.2 (R2013b)
Other requirements
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More info in the toolbox web page !
or in the repository itself
Some minor fixes since v0.1.1 specially for MAC users.
The EP ltd. algortihm (eplimited) was added in the two flavors available at its web page (eplimited1 and eplimited2).